miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|211871998|gb|DV977484.2|DV977484 GGTTGACCCAAAAACGCACCAAAAGCCTTCACATACATAGTTGATGGAATAATATTAGTCCTGTAATCTATTGCGATACG
GATTGAGCAGCTTTGAAGTTCAAGAAATACTCTACAAGGTTAGACTAAGTTATCCCGCTGCAACATAAATTGAGCAGCTT
TAAAATTTCTAGTTTTAACAAAATCTCCAAAAAGATGTTACCAAACCAACTATTAAGCATATTGCGCAATCCCTCTAATT
ACACAATAGCATTTGCTGCACTGGCAATTCTAGGCCACAAATCAGCACACTCTTTCCCAATGGGCCCTGTGATAGCAGAA
CCTTTCATTTCTCCCTTTGGATTTACTATGACGCCCGCATTATCTTCGAAATACATATAAACACCGTCCTTTCGGCGCCA
GGGCTTCCGCTGGCGAACAATGACGGCAGGCATAACCTTCTTTCTGAGGTCAGGCTTTCCCTTCTTGACAGTGGCCATGA
CCATATCCCCAACACAGGCCGCAGGAAGCCTGTTGAGACGACCCTTGATTCCCTTCACAGAAATTATGTACAAGTTCTTG
GCTCCTGTGTTATCTGCACAGTTCACCGTGGCTGCCACTGGCAGACCCAGTGACATCCTGAACTTGTTACCCGCGCTACC
TCCACGACCTCTCTTCGACATGGCTGCTCCCCTTGTTTCTCTTGTCAATGATTAGAGGCATCGGGGGCGTAACGCCCTCG
ACCTATTCTCAAACTTTAAATAGGTAAGACGGTGCGGCTGCTCCATTGAGCCGTGCCACGGAATCGAGAGCTCCAAGTGG
GCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAAAGTCGAGTTACGGTGCCAAACTGCGCGCTAACCCAGA
TCCCACAAAGGGTGTTGGGTGATTAGACAGCAGGACGGTGGTCATGAAAGTCGAAATCCGCTAAGGAGTGTGTAACAACT
CACCTGGCGAATCAACTAGCCCCGAAAATGG




Most similar to sp|P49690|RL23_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P49690|RL23_ARATH 60S ribosomal protein L23 OS=Arabidopsis
           thaliana GN=RPL23A PE=2 SV=3
          Length = 140

 Score =  278 bits (711), Expect = 4e-74
 Identities = 135/140 (96%), Positives = 140/140 (100%)
 Frame = -1

Query: 661 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPAACVGDM 482
           MSKRGRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLP+ACVGDM
Sbjct: 1   MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60

Query: 481 VMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGP 302
           VMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGV+MYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 301 IGKECADLWPRIASAANAIV 242
           IGKECADLWPRIASAANAIV
Sbjct: 121 IGKECADLWPRIASAANAIV 140